Publications

Read highlighted new and noteworthy DNA barcoding research articles in the Featured Publications section or browse automatically updated publication feeds from barcoding-related journals and aggregators such as Public Library of Science (PLoS) and Molecular Ecology Resources.

Featured Publications

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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J, Del Campo J, Dolan JR, Dunthorn M, Edvardsen B, Holzmann M, Kooistra WH, Lara E, Le Bescot N, Logares R, Mahé F, Massana R, Montresor M, Morard R, Not F, Pawlowski J, Probert I, Sauvadet AL, Siano R, Stoeck T, Vaulot D, Zimmermann P, Christen R., 40 (21), Nov 27 2012, Nucleic Acids Research
The Chaperonin-60 Universal Target Is a Barcode for Bacteria That Enables De Novo Assembly of Metagenomic Sequence Data
Links MG, Dumonceaux TJ, Hemmingsen SM, Hill JE, 7(11):e49755, Nov 26 2012, PLoS One
The Effect of Geographical Scale of Sampling on DNA Barcoding
Bergsten J, Bilton DT, Fujisawa T, Elliott M, Monaghan MT, Balke M, Hendrich L, Geijer J, Herrmann J, Foster GN, Ribera I, Nilsson AN, Barraclough TG, Vogler AP., 2012 Oct 1;61(5):851-869, Oct 1 2012, Systematic Biology
Wolbachia and DNA Barcoding Insects: Patterns, Potential, and Problems
M. Alex Smith, Claudia Bertrand, Kate Crosby, Eldon S. Eveleigh, Jose Fernandez-Triana, Brian L. Fisher, Jason Gibbs, Mehrdad Hajibabaei, Winnie Hallwachs, Katharine Hind, Jan Hrcek, Da-Wei Huang, Milan Janda, Daniel H. Janzen, Yanwei Li, Scott E. Miller, Laurence Packer, Donald Quicke, Sujeevan Ratnasingham, Josephine Rodriguez, Rodolphe Rougerie, Mark R. Shaw, Cory Sheffield, Julie K. Stahlhut, Dirk Steinke, James Whitfield, Monty Wood, Xin Zhou, 7(5): e36514, May 2 2012, PLoS ONE, Discussion
A New Species of Soapfish (Teleostei: Serranidae: Rypticus), with Redescription of R. subbifrenatus and Comments on the Use of DNA Barcoding in Systematic Studies
Baldwin, C.C. & L.A. Weigt., No. 1, 23-36, Apr 3 2012, Copeia
A new feather mite species of the genus Proctophyllodes Robin, 1877 (Astigmata: Proctophyllodidae) from the Long-tailed Tit Aegithalos caudatus (Passeriformes: Aegithalidae)—morphological description with DNA barcode data
Mironov, S.V., Dabert, J., & Dabert, M., 3253: 54–61, Apr 2 2012, Zootaxa
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
Conrad L. Schocha,1, Keith A. Seifertb,1, Sabine Huhndorfc, Vincent Robertd, John L. Spougea, C. André Levesqueb, Wen Chenb, and Fungal Barcoding Consortiuma,2, 109 (16), Mar 27 2012, Proceedings of the National Academy of Sciences, Discussion
DNA barcoding of parasitic nematodes: Is it kosher?
Siddall ME, Kvist S, Phillips AJ, Oceguera-Figueroa AF., [Epub ahead of print], Feb 2 2012, J Parasitol
DNA barcoding of the leaf-mining moth subgenus Ectoedemia s. str. (Lepidoptera: Nepticulidae) with COI and EF1-α: two are better than one in recognising cryptic species
Erik J. van Nieukerken , Camiel Doorenweerd , Frank R. Stokvis , Dick S.J. Groenenberg, 81 (1) – 2012, Jan 24 2012, Contributions to Zoology
New taxonomy and old collections: integratingDNA barcoding into the collection curation process
N. PUILLANDRE, P. BOUCHET, M.-C. BOISSELIER-DUBAYLE, J. BRISSET, B. BUGE, M. CASTELIN, S. CHAGNOUX, T. CHRISTOPHE, L. CORBARI, J. LAMBOURDIÈRE, P. LOZOUET, G. MARANI, A. RIVASSEAU, N. SILVA, Y. TERRYN, S. TILLIER, J. UTGE, S. SAMADI, DOI: 10.1111/j.1755-0998.2011.03105.x, Jan 4 2012, Molecular Ecology Resources
Noninvasive molecular methods to identify live scarab larvae: an example of sympatric pest and nonpest species in New Zealand
Lefort, MC, Boyer, S, Worner, SP, and K . Armstrong, Published Online, Dec 22 2011, Molecular Ecology Resources
Use of DNA barcodes to identify invasive armyworm Spodoptera species in Florida
Rodney N. Nagoshi, Julieta Brambila, and Robert L. Meagher, Vol. 11 | Article 154, Nov 10 2011, Journal of Insect Science
Mercury Concentrations in Fish Jerky Snack Food: Marlin, Ahi, and Salmon
Jane M Hightower and David L Brown, 10:90, Oct 11 2011, Environmental Health
Molecular and morphological characterisation of Pseudococcidae surveyed on crops and ornamental plants in Spain.
Beltrà A, Soto A, Malausa T., FirstView Article : pp 1-8, Oct 10 2011, Bulletin of Entomological Research, Discussion
Misidentification of OLGA-PH-J/92, believed to be the only crustacean cell line
Lee, L.E.J.; Bufalino, M.R.; Christie, A.E.; Frischer, M.E.; Soin, T; Tsui, C.K.M.; Hanner, R.H.; Smagghe, G., 47:665–674, Sep 22 2011, The Society for In Vitro Biology, Discussion
When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths
John James Wilson, Rodolphe Rougerie, Justin Schonfeld, Daniel H Janzen, Winnie Hallwachs, Mehrdad Hajibabaei, Ian J Kitching, Jean Haxaire & Paul DN Hebert, 11:18, Aug 1 2011, BMC Ecology, Discussion
DNA barcoding in the rust genus Chrysomyxa and its implications for the phylogeny of the genus
Feau N, Vialle A, Allaire M, Maier W, Hamelin RC., [Epub ahead of print], Jun 9 2011, Mycologia, Discussion
Nesting biology and DNA barcode analysis of Ceratina dupla and C. mikmaqi, and comparisons with C. calcarata (Hymenoptera: Apidae: Xylocopinae)
J.L. Vickruck, S.M. Rehan, C.S. Sheffield, M.H. Richards, 2011, 143:(3) 254-262, Jun 1 2011, The Canadian Entomologist, Discussion
Choosing and Using a Plant DNA Barcode
Hollingsworth PM, Graham SW, Little DP, 6(5), May 26 2011, PLoS ONE, Discussion
DNA barcoding resolves species complexes in Stigmella salicis and S. aurella species groups and shows additional cryptic speciation in S. salicis (Lepidoptera: Nepticulidae)
Nieukerken, E.J. van, Mutanen, M. & Doorenweerd, C., 132 (4): 235-255, May 14 2011, Entomologisk Tidskrift

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Other Resources

For more publications and materials on DNA barcoding we recommend the following resources:

PubMed

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[Principles for molecular identification of traditional Chinese materia medica using DNA barcoding].
31 December 1969, Chen, SL, Yao, H, Han, JP, Xin, TY, Pang, XH, Shi, LC, Luo, K, Song, JY, Hou, DY, Shi, SM, Qian, ZZ
DNA barcoding commercially important fish species of Turkey.
14 May 2013, Keskın, E, Atar, HH
High-throughput tetrad analysis.
12 May 2013, Ludlow, CL, Scott, AC, Cromie, GA, Jeffery, EW, Sirr, A, May, P, Lin, J, Gilbert, TL, Hays, M, Dudley, AM

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Molecular Ecology Resources

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Amplicon pyrosequencing late Pleistocene permafrost: the removal of putative contaminant sequences and small‐scale reproducibility
20 May 2013, Teresita M. Porter, G. Brian Golding, Christine King, Duane Froese, Grant Zazula, Hendrik N. Poinar
Permanent Genetic Resources added to Molecular Ecology Resources Database 1 February 2013–31 March 2013
20 May 2013, , M. C. Arias, Christiane Atteke, S. C. Augusto, J. Bailey, Pilar Bazaga, Luciano B. Beheregaray, Laure Benoit, Rumsaïs Blatrix, Céline Born, R. M. Brito, Hai‐kui Chen, Sara Covarrubias, Clara Vega, Champlain Djiéto‐Lordon, Marie‐Pierre Dubois, F. O. Francisco, Cristina García, P. H. P. Gonçalves, Clementina González, Carla Gutiérrez‐Rodríguez, Michael P. Hammer, Carlos M. Herrera, H. Itoh, S. Kamimura, H. Karaoglu, S. Kojima, Shou‐Li Li, Hannah J. Ling, Pável F. Matos‐Maraví, Doyle McKey, Judicaël Mezui‐M'Eko, Juan Francisco Ornelas, R. F. Park, María I. Pozo, Satu Ramula, Cristina Rigueiro, Jonathan Sandoval‐Castillo, L. R. Santiago, Miyuki M. Seino, Chang‐Bing Song, H. Takeshima, Anti Vasemägi, C. R. Wellings, Ji Yan, Du Yu‐Zhou, Chang‐Rong Zhang, Tian‐Yun Zhang
Optimizing preservation protocols to extract high‐quality RNA from different tissues of echinoderms for next‐generation sequencing
20 May 2013, Rocío Pérez‐Portela, Ana Riesgo

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